University of Calgary
people & news	publications

2012

H. Huang and H.J. Vogel, "Structural basis for the activation of platelet integrin alphaIIb-beta3 by Calcium- and Integrin- Binding protein 1," J. Am. Chem. Soc. (2012) accepted. http://dx.doi.org/10.1021/ja2111306

O. Rekdal, B.E. Haug, M. Kalaaji, H.N. Hunter, I. Lindin, I. Israelsson, T. Solstad, N. Yang, M. Brandl, D. Mantzilas and H.J. Vogel, "Relative Spatial Positions of Tryptophan and Cationic Residues in Helical Membrane-active Peptides Determine Their Cytotoxicity," Journal of Biological Chemistry 287 (2012) 233-244. http://dx.doi.org/10.1074/jbc.M111.279281

A. Kuhn, V. Epp, G. Schmidt, S. Narayanan, V. Thangadurai and M. Wilkening, "Spin-alignment echo NMR: probing Li+ hopping motion in the solid electrolyte Li7La3Zr2O12 with garnet-type tetragonal structure," J. Phys.: Condens. Matter 24 (2012) 035901. http://dx.doi.org/10.1088/0953-8984/24/3/035901

E.F. Haney, K. Nazmi, J.G.M. Bolscher, H.J. Vogel, "Structural and biophysical characterization of an antimicrobial peptide chimera comprised of lactoferricin and lactoferrampin," Biochimica et Biophysica Acta (BBA) - Biomembranes 1818 (2012) 762–775. http://dx.doi.org/10.1016/j.bbamem.2011.11.023

2011

K.D. Krewulak, W. Köster and H.J. Vogel, "Siderophore-Binding Periplasmatic Protein FhuD and Related Periplasmic Binding Proteins Involved in Bacterial Iron Uptake," Encyclopedia of Inorganic and Bioinorganic Chemistry, Wiley (2011).
http://dx.doi.org/10.1002/9781119951438.eibc0670

M.J. Pushie, R. Shaykhutdinov, A. Nazyrova, C. Graham & H.J. Vogel, "An NMR Metabolomics Study of Elk Inoculated with Chronic Wasting Disease," Journal of Toxicology and Environmental Health, Part A 74 (2011) 1476-1492. (special issue "Prion Research in Perspective") http://dx.doi.org/10.1080/15287394.2011.618977

L.T. Nguyen, E.F. Haney, H.J. Vogel, "The expanding scope of antimicrobial peptide structures and their modes of action," Trends in Biotechnology 29 (2011) 464-472. http://dx.doi.org/10.1016/j.tibtech.2011.05.001

L. Truong, V. Thangadurai, "Soft-chemistry of garnet-type Li5+xBaxLa3-xNb2O12 (x = 0, 0.5, 1): Reversible H+/Li+ ion-exchange reaction and their X-ray, 7Li MAS NMR, IR, and AC impedance spectroscopy characterization," Chemistry of Materials 23 (2011) 3970-3977. http://dx.doi.org/10.1021/cm2015127

G.E. Duggan, D.S. Hittel, C.C. Hughey, A. Weljie, H.J. Vogel, J. Shearer, "Differentiating short- and long-term effects of diet in the obese mouse using 1H nuclear magnetic resonance metabolomics," Diabetes Obesity & Metabolism 13 (2011) 859-862. http://dx.doi.org/10.1111/j.1463-1326.2011.01410.x

J.G.M. Bolscher, M.J. Oudhoff, K. Nazmi, J.M. Antos, C.P. Guimaraes, E. Spooner, E.F. Haney, J.J.G. Vallejo, H.J. Vogel, W. van't Hof, H.L. Ploegh, E.C.I. Veerman, "Sortase A as a tool for high-yield histatin cyclization," FASEB Journal 25 (2011) 2650-2658. http://dx.doi.org/10.1096/fj.11-182212

L. Spencer, E. Coomes, E. Ye, V. Terskikh, A. Ramzy, V. Thangadurai, and G. Goward, "Structural Analysis of Lanthanum-Containing Battery Materials Using 139La Solid-State NMR," Canadian Journal of Chemistry 89 (2011) 1105-1117. (Special Issue) http://dx.doi.org/10.1139/v11-049

D. Skachkov, M. Krykunov, T. Ziegler, "An improved scheme for the calculation of NMR chemical shifts in periodic systems based on gauge including atomic orbitals and density functional theory," Canadian Journal of Chemistry 89 (2011) 1150-1161. (Special Issue) http://dx.doi.org/10.1139/v11-050

L.T. Nguyen, P.H.S. Kwakman, D.I. Chan, Z.H. Liu, L. de Boer, S.A.J. Zaat, H.J. Vogel, "Exploring Platelet Chemokine Antimicrobial Activity: Nuclear Magnetic Resonance Backbone Dynamics of NAP-2 and TC-1," Antimicrobial Agents and Chemotherapy 55 (2011) 2074-2083. http://dx.doi.org/10.1128/AAC.01351-10

G.E. Duggan, D.S. Hittel, C.W. Sensen, A.M. Weljie, H.J. Vogel, J. Shearer, "Metabolomic response to exercise training in lean and diet-induced obese mice," Journal of Applied Physiology 110 (2011) 1311-1318. http://dx.doi.org/10.1152/japplphysiol.00701.2010

S.C. Booth, M.L. Workentine, J. Wen, R. Shaykhutdinov, H.J. Vogel, H. Ceri, R.J. Turner, A.M. Weljie, "Differences in Metabolism between the Biofilm and Planktonic Response to Metal Stress," Journal of Proteome Research 10 (2011) 3190-3199. http://dx.doi.org/10.1021/pr2002353

H. Zhekova, M. Seth, T. Ziegler, "Introduction of a new theory for the calculation of magnetic coupling based on spin-flip constricted variational density functional theory. Application to trinuclear copper complexes which model the native intermediate in multicopper oxidases," Journal of Chemical Theory and Computation 7 (2011) 1858-1866. http://dx.doi.org/10.1021/ct200141v

S. Narayanan, V. Thangadurai, "Effect of Y substitution for Nb in Li5La3Nb2O12 on Li ion conductivity of garnet-type solid electrolytes," Journal of Power Sources 196 (2011) 8085-8090. http://dx.doi.org/10.1016/j.jpowsour.2011.05.031

C.S. Chan, E.F. Haney, H.J. Vogel, R.J. Turner, "Towards understanding the Tat translocation mechanism through structural and biophysical studies of the amphipathic region of TatA from Escherichia coli," Biochimica et Biophysica Acta (BBA) - Biomembranes1808 (2011) 2289-2296. http://dx.doi.org/10.1016/j.bbamem.2011.05.024

J.A. Saponja, H.J. Vogel, "Quadrupolar central transition (QCT) and 13C NMR competition studies of metal ion binding to ovotransferrin," Canadian Journal of Chemistry 89 (2011) 779-788. (Special Issue) http://dx.doi.org/10.1139/v11-019

T.L. Spencer, A. Ramzy, V. Thangadurai, and G.R. Goward, "Structural Complexity and Electrical Properties of the Garnet-Type Structure LaLi0.5Fe0.2O2.09 Studied by 7Li and 139La Solid State NMR Spectroscopy and Impedance Spectroscopy," Chemistry of Materials 23 (2011) 3105–3113. http://dx.doi.org/10.1021/cm200823p

B.C.H. Chu, H.J. Vogel, "A structural and functional analysis of type III periplasmic and substrate binding proteins: their role in bacterial siderophore and heme transport," Biological Chemistry 392 (2011) 39-52. http://dx.doi.org/10.1515/BC.2011.012

A. Kuhn, S. Narayanan, L. Spencer, G. Goward, V. Thangadurai, and M. Wilkening, "Li self-diffusion in garnet-type Li7La3Zr2O12 as probed directly by diffusion-induced 7Li spin-lattice relaxation NMR spectroscopy," Phys. Rev. B 83 (2011) 094302. http://dx.doi.org/10.1103/PhysRevB.83.094302

J.L. Gifford, H. Ishida, H.J. Vogel, "Fast methionine-based solution structure determination of calcium-calmodulin complexes," Journal of Biomolecular NMR 50 (2011) 71-81. http://dx.doi.org/10.1007/s10858-011-9495-3

G.E. Duggan, B.J. Miller, F.R. Jirik, H.J. Vogel, "Metabolic profiling of vitamin C deficiency in Gulo-/- mice using proton NMR spectroscopy," Journal of Biomolecular NMR 49 (2011) 165-173. http://dx.doi.org/10.1007/s10858-011-9485-5

H. Huang, H. Ishida, A.P. Yamniuk and H.J. Vogel, "The solution structures of Ca2+- CIB1 and Mg2+-CIB1 and their interactions with the platelet integrin aIIb cytoplasmic domain," Journal of Biological Chemistry 286 (2011) 17181-17192. http://dx.doi.org/10.1074/jbc.M110.179028

O.F. Bathe, R. Shaykhutdinov, K. Kopciuk, A.M. Weljie, A. McKay, F.R. Sutherland, E. Dixon, N. Dunse, D. Sotiropoulos and H.J. Vogel, "Feasibility of Identifying Pancreatic Cancer Based on Serum Metabolomics," Cancer Epidemiol Biomarkers Prev 20 (2011) 140-147. http://dx.doi.org/10.1158/1055-9965.EPI-10-0712

2010

M.G. Hobbs, C.J. Knapp, P.T. Welsh, J. Borau-Garcia, T. Ziegler, R. Roesler, "Anionic N-heterocyclic carbenes with N,N'-Bis(fluoroaryl) and N,N'-bis(perfluoroaryl) substituents," Chemistry - A European Journal 16 (2010) 14520-14533. http://dx.doi.org/10.1002/chem.201001698

H. Ishida, and H.J. Vogel, "The Solution Structure of a Plant Calmodulin and the CaM-binding Domain of the Vacuolar Calcium-ATPase BCA1 Reveals a New Binding and Activation Mechanism," Journal of Biological Chemistry 285 (2010) 38502-38510. http://dx.doi.org/10.1074/jbc.M110.131201

R. Schicho, A. Nazyrova, R. Shaykhutdinov, G. Duggan , H.J. Vogel, and M. Storr, "Quantitative metabolomic profiling of serum and urine in DSS-induced ulcerative colitis of mice by 1H NMR spectroscopy," J. Proteome Res. 9 (2010) 6265-6273. http://dx.doi.org/10.1021/pr100547y

E.S. Kadantsev and T. Ziegler, "First-principles calculation of parameters of electron paramagnetic resonance spectroscopy in solids", Magnetic Resonance in Chemistry 48 (2010) S2-S10. (Invited Article, Special Issue) http://dx.doi.org/10.1002/mrc.2655

J.M. Taylor, R.K. Mah, I.L. Moudrakovski, C.I. Ratcliffe, R. Vaidhyanathan, and G.K.H. Shimizu, "Facile Proton Conduction via Ordered Water Molecules in a Phosphonate Metal-Organic Framework", J. Am. Chem. Soc. 132 (2010) 14055-14057. http://dx.doi.org/10.1021/ja107035w

D.I. Chan, B.C.H. Chu, C.K.Y. Lau, H.N. Hunter, D.M. Byers, H.J. Vogel, "NMR solution structure and biophysical characterization of vibrio harveyi acyl carrier protein A75H effects of divalent metal ions," Journal of Biological Chemistry 285 (2010) 30558-30566. http://dx.doi.org/10.1074/jbc.M110.128298

Q. Li and V. Thangadurai, "A comparative 2 and 4-probe DC and 2-probe AC electrical conductivity of novel co-doped Ce(0.9-x)RExMo0.1O(2.1–0.5x) (RE=Y, Sm, Gd; x = 0.2, 0.3)," Journal of Materials Chemistry 20 (2010) 7970-7983. http://dx.doi.org/10.1039/c0jm01324b

M.L. Workentine, J.J. Harrison, A.M. Weljie, V.A. Tran, P.U. Stenroos, V. Tremaroli, H.J. Vogel, H. Ceri, R.J. Turner, "Phenotypic and metabolic profiling of colony morphology variants evolved from Pseudomonas fluorescens biofilms," Environmental Microbiology 12 (2010) 1565-1577. http://dx.doi.org/10.1111/j.1462-2920.2010.02185.x

J.S. Ritch, S.D. Robertson, M. Risto, and T. Chivers, "Synthesis, Multinuclear NMR Spectra, and X-ray Structures of tBu2PNP(I)tBu2 and EPR2NP(I)R2 (E = Se, Te; R = iPr, tBu)" Inorg. Chem. 49 (2010) 4681-4686. http://dx.doi.org/10.1021/ic1005055

D. Skachkov, M. Krykunov, E. Kadantsev and T. Ziegler, "The Calculation of NMR Chemical Shifts in Periodic Systems Based on Gauge Including Atomic Orbitals and Density Functional Theory," J. Chem. Theory Comput.6 (2010) 1650–1659. http://dx.doi.org/10.1021/ct100046a

H. Huang, H. Ishida, H.J. Vogel, "The solution structure of the Mg2+ form of soybean calmodulin isoform 4 reveals unique features of plant calmodulins in resting cells," Protein Science 19 (2010) 475-485. http://dx.doi.org/10.1002/pro.325

R. Otten, B. Chu, K.D. Krewulak, H.J. Vogel and F.A.A. Mulder, "Comprehensive and Cost-Effective NMR Spectroscopy of Methyl Groups in Large Proteins," J. Am. Chem. Soc. 132 (2010) 2952–2960. http://dx.doi.org/10.1021/ja907706a

L.T. Nguyen, D.I. Chan, L. Boszhard, S.A.J. Zaat, H.J. Vogel, "Structure-function studies of chemokine-derived carboxy-terminal antimicrobial peptides," Biochimica et Biophysica Acta (BBA) - Biomembranes 1798 (2010) 1062-1072. http://dx.doi.org/10.1016/j.bbamem.2009.11.021

S.A. Lusceac, M.R. Vogel, C.R. Herbers, "2H and 13C NMR studies on the temperature-dependent water and protein dynamics in hydrated elastin, myoglobin and collagen," Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics 1804 (2010) 41-48. http://dx.doi.org/10.1016/j.bbapap.2009.06.009

2009

M. Krykunov, T. Ziegler and E. van Lenthe, "Implementation of a Hybrid DFT Method for Calculating NMR Shieldings Using Slater-Type Orbitals with Spin-Orbital Coupling Included. Applications to 187Os, 195Pt, and 13C in Heavy-Metal Complexes," J. Phys. Chem. A 113 (2009) 11495-11500. http://dx.doi.org/10.1021/jp901991s

H. Ishida, M. Rainaldi, H.J. Vogel, "Structural Studies of Soybean Calmodulin Isoform 4 Bound to the Calmodulin-binding Domain of Tobacco Mitogen-activated Protein Kinase Phosphatase-1 Provide Insights into a Sequential Target Binding Mode," Journal of Biological Chemistry 284 (2009) 28292-28305. http://dx.doi.org/10.1074/jbc.M109.025080

A.P. Yamniuk, H. Ishida, D. Lippert, H.J. Vogel, "Thermodynamic Effects of Noncoded and Coded Methionine Substitutions in Calmodulin," Biophysical Journal 96 (2009) 1495-1507. http://dx.doi.org/10.1016/j.bpj.2008.10.060

R.A. Shaykhutdinov, G.D. MacInnis, R. Dowlatabadi, A.M. Weljie, H.J. Vogel, "Quantitative analysis of metabolite concentrations in human urine samples using 13C{1H} NMR spectroscopy," Metabolomics 5 (2009) 307-317. http://dx.doi.org/10.1007/s11306-009-0155-5

E.-J. Lee, R. Shaykhutdinov, A.M. Weljie, H.J. Vogel, P.J. Facchini, S.-U. Park, Y.-K. Kim, T.-J. Yang, "Quality Assessment of Ginseng by 1H NMR Metabolite Fingerprinting and Profiling Analysis," J. Agric. Food Chem. 57 (2009) 7513-7522. http://dx.doi.org/10.1021/jf901675y

E.F. Haney, H.N. Hunter, K. Matsuzaki, H.J. Vogel, "Solution NMR studies of amphibian antimicrobial peptides: Linking structure to function?," Biochimica et Biophysica Acta (BBA) - Biomembranes 1788 (2009) 1639–1655. (review) http://dx.doi.org/10.1016/j.bbamem.2009.01.002

A.P. Yamniuk, K.L. Anderson, M.E. Fraser, H.J. Vogel, "Auxiliary Ca2+ binding sites can influence the structure of CIB1", Protein Science 18 (2009) 1128-1134. http://dx.doi.org/10.1002/pro.104

V. Tremaroli, M.L. Workentine, A.M. Weljie, H.J. Vogel, H. Ceri, C. Viti, E. Tatti, P. Zhang, A.P. Hynes, R.J. Turner, D. Zannoni, "Metabolomic Investigation of the Bacterial Response to a Metal Challenge", Applied and Environmental Micorbiology 75 (2009) 719-728. http://dx.doi.org/10.1128/AEM.01771-08

E.F. Haney and H.J. Vogel, "NMR of Antimicrobial Peptides," Annual Reports on NMR Spectroscopy 65 (2009) 1-51. http://dx.doi.org/10.1016/S0066-4103(08)00201-9

 

E.F. Haney, K. Nazmi, F. Lau, J.G.M. Bolscher, H.J. Vogel, "Novel lactoferrampin antimicrobial peptides derived from human lactoferrin", Biochimie 91 (2009) 141-154. http://dx.doi.org/10.1016/j.biochi.2008.04.013

C.S. Lopez, R.S. Peacock, J.H. Crosa, H.J. Vogel, "Molecular characterization of the TonB2 protein from the fish pathogen Vibrio anguillarum", Biochemical Journal 418 (2009) 49-59. http://dx.doi.org/10.1042/BJ20081462

D.S. Wishart, C. Knox, A.C. Guo, R. Eisner, N. Young, B. Gautam, D.D. Hau, N. Psychogios, E. Dong, S. Bouatra, R. Mandal, I. Sinelnikov, J. Xia, L. Jia, J.A. Cruz, E. Lim, C.A. Sobsey, S. Shrivastava, P. Huang, P. Liu, L. Fang, J. Peng, R. Fradette, D. Cheng, D. Tzur, M. Clements, A. Lewis, A. De Souza, A. Zuniga, M. Dawe, Y. Xiong, D. Clive, R. Greiner, A. Nazyrova, R. Shaykhutdinov, L. Li, H.J. Vogel and I. Forsythe, "HMDB: A knowledgebase for the human metabolome," Nucleic Acids Research 37 (2009) Supplementary Issue #1, D603-D610. http://dx.doi.org/10.1093/nar/gkn810

R. Dowlatabadi, A.M. Weljie, T.A. Thorpe, E.C. Yeung, H.J. Vogel, "Metabolic Footprinting Study of White Spruce Somatic Embryogenesis Using NMR Spectroscopy," Plant Physiology and Biochemistry 47 (2009) 343-350. http://dx.doi.org/10.1016/j.plaphy.2008.12.023

2008

A.M. Weljie, J. Newton, F.R. Jirik, H.J. Vogel, "Evaluating Low-Intensity Unknown Signals in Quantitative Proton NMR Mixture Analysis", Analytical Chemistry 80 (2008) 8956-8965. http://dx.doi.org/10.1021/ac8012362

H. Ishida, M.A. Borman, A. Meredith, J. Ostrander, H.J. Vogel, J.A. MacDonald, "Solution structure of the calponin homology (CH) domain from the smoothelin-like 1 protein - A unique apocalmodulin-binding mode and the possible role of the C-terminal type-2 CH-domain in smooth muscle relaxation", Journal of Biological Chemistry 283 (2008) 20569-20578. http://dx.doi.org/10.1074/jbc.M800627200

J.M. Hagel, A.M. Weljie, H.J. Vogel, P.J. Facchini, "Quantitative 1H nuclear magnetic resonance metabolite profiling as a functional genomics platform to investigate alkaloid biosynthesis in opium poppy", Plant Physiology 147 (2008) 1805-1821. http://dx.doi.org/10.1104/pp.108.120493

J. Shearer, G. Duggan, A. Weljie, D.S. Hittel, D.H. Wasserman, H.J. Vogel, "Metabolomic profiling of dietary-induced insulin resistance in the high fat-fed C57BL/6J mouse", Diabetes Obesity & Metabolism 10 (2008) 950-958. http://dx.doi.org/10.1111/j.1463-1326.2007.00837.x

H. Ishida, H. Huang, A.P. Yamniuk, Y. Takaya, H.J. Vogel, "The solution structures of two soybean calmodulin isoforms provide a structural basis for their selective target activation properties", Journal of Biological Chemistry 283 (2008) 14619-14628. http://dx.doi.org/10.1074/jbc.M801398200

V.V. Andrushchenko, M.H. Aarabi, L.T. Nguyen, E.J. Prenner, H.J. Vogel, "Thermodynamics of the interactions of tryptophan-rich cathelicidin antimicrobial peptides with model and natural membranes", Biochimica Et Biophysica ACTA-Biomembranes 1778 (2008) 1004-1014. http://dx.doi.org/10.1016/j.bbamem.2007.12.022

K.G. Zulak, A.M. Weljie, H.J. Vogel and P.J. Facchini, "Quantitative 1H NMR metabolomics reveals extensive metabolic reprogramming of primary and secondary metabolism in elicitor-treated opium poppy cell cultures," BMC Plant Biology 8 (2008) 5. http://dx.doi.org/10.1186/1471-2229-8-5

D.I. Chan, H.N. Hunter, B.F. Tack, and H.J. Vogel, "Human macrophage inflammatory protein 3 alpha: Protein and peptide nuclear magnetic resonance solution structures, dimerization, dynamics, and anti-infective properties" Antimicrobial Agents and Chemotherapy 52 (2008) 883-894. http://dx.doi.org/10.1128/AAC.00805-07

A.P. Yamniuk, J.L. Gifford, S. Linse, H.J. Vogel, "Effects of metal-binding loop mutations on ligand binding to calcium- and integrin-binding protein 1. Evolution of the EF-hand?" Biochemistry 47 (2008) 1696-1707. http://dx.doi.org/10.1021/bi701494m